Rhodococcus ruber strain R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain R1 is a Gram-positive bacterium predominantly found in soil habitats. This species is characterized by its possession of flagella, which may contribute to its motility in the soil environment. R. ruber strain R1 contains two replicons, indicating a potentially complex genomic organization that may enable it to adapt to various environmental conditions. The strain is documented under two accessions: NZ_CP038032.2 and NZ_CP038030.2, which provide genetic and genomic information pertinent to its classification and study. The presence of flagella suggests that R. ruber strain R1 may exhibit enhanced mobility, allowing it to navigate through the soil matrix, potentially accessing nutrients or interacting with other soil microorganisms. This bacterium's ecological role in soil environments could be significant, especially in terms of biogeochemical cycling and interactions with other soil organisms. Its ability to move and adapt may influence nutrient availability and contribute to soil health and fertility. Understanding the traits of Rhodococcus ruber strain R1 can provide insights into its function and importance within the soil ecosystem, highlighting the intricate relationships present in microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain R1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitroreductase family deazaflavin-dependent oxidoreductaseE2561_RS23830Not AvailableNegative5237838 - 523831417866.7
llm class f420-dependent oxidoreductaseE2561_RS23835Not AvailablePositive5238407 - 523920128879.2
acetyl-coa acetyltransferaseE2561_RS23840Not AvailablePositive5239332 - 524055843408.1
parb/repb/spo0j family partition proteinE2561_RS23845Not AvailablePositive5240569 - 524208553415.0
winged helix-turn-helix transcriptional regulatorE2561_RS23850Not AvailablePositive5242096 - 524301934096.8
mkrn2 opposite strand proteinE2561_RS23855Not AvailablePositive5243029 - 52432327370.91
abc transporter substrate-binding protein/permeaseE2561_RS23860Not AvailablePositive5243273 - 524506963436.9
amino acid abc transporter atp-binding proteinE2561_RS23865Not AvailablePositive5245073 - 524581626570.2
phox family proteinE2561_RS23870Not AvailablePositive5245955 - 524803073013.8
haloacid dehalogenase type iiE2561_RS23875Not AvailableNegative5248083 - 524880226197.4

Displaying genes 4851 – 4860 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.