Rhodococcus ruber strain R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain R1 is a Gram-positive bacterium predominantly found in soil habitats. This species is characterized by its possession of flagella, which may contribute to its motility in the soil environment. R. ruber strain R1 contains two replicons, indicating a potentially complex genomic organization that may enable it to adapt to various environmental conditions. The strain is documented under two accessions: NZ_CP038032.2 and NZ_CP038030.2, which provide genetic and genomic information pertinent to its classification and study. The presence of flagella suggests that R. ruber strain R1 may exhibit enhanced mobility, allowing it to navigate through the soil matrix, potentially accessing nutrients or interacting with other soil microorganisms. This bacterium's ecological role in soil environments could be significant, especially in terms of biogeochemical cycling and interactions with other soil organisms. Its ability to move and adapt may influence nutrient availability and contribute to soil health and fertility. Understanding the traits of Rhodococcus ruber strain R1 can provide insights into its function and importance within the soil ecosystem, highlighting the intricate relationships present in microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain R1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6924 domain-containing proteinE2561_RS25165Not AvailableNegative29683 - 3048930115.0
hypothetical proteinE2561_RS25170Not AvailableNegative30575 - 3132125431.4
nuca/nucb deoxyribonuclease domain-containing proteinE2561_RS25175Not AvailableNegative31383 - 3250440961.7
chromosomal replication initiator protein dnaaE2561_RS00005Not AvailablePositive1 - 166262129.9
dna polymerase iii subunit betaE2561_RS00010Not AvailablePositive2199 - 338341422.8
dna replication/repair protein recfE2561_RS00015Not AvailablePositive3409 - 466245062.7
duf721 family proteinE2561_RS00020Not AvailablePositive4659 - 520719602.2
metal-dependent hydrolaseE2561_RS00025Not AvailablePositive5296 - 618633201.7
pdr/vanb family oxidoreductaseE2561_RS00030Not AvailablePositive6183 - 727138668.3
alpha/beta fold hydrolaseE2561_RS00035Not AvailablePositive7281 - 818333627.2

Displaying genes 31 – 40 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.