Rhodococcus ruber strain R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain R1 is a Gram-positive bacterium predominantly found in soil habitats. This species is characterized by its possession of flagella, which may contribute to its motility in the soil environment. R. ruber strain R1 contains two replicons, indicating a potentially complex genomic organization that may enable it to adapt to various environmental conditions. The strain is documented under two accessions: NZ_CP038032.2 and NZ_CP038030.2, which provide genetic and genomic information pertinent to its classification and study. The presence of flagella suggests that R. ruber strain R1 may exhibit enhanced mobility, allowing it to navigate through the soil matrix, potentially accessing nutrients or interacting with other soil microorganisms. This bacterium's ecological role in soil environments could be significant, especially in terms of biogeochemical cycling and interactions with other soil organisms. Its ability to move and adapt may influence nutrient availability and contribute to soil health and fertility. Understanding the traits of Rhodococcus ruber strain R1 can provide insights into its function and importance within the soil ecosystem, highlighting the intricate relationships present in microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain R1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine-type recombinase/integraseE2561_RS00475Not AvailableNegative107932 - 10907744009.4
type ii toxin-antitoxin system phd/yefm family antitoxinE2561_RS00480Not AvailablePositive109479 - 1097549792.56
type ii toxin-antitoxin system rele family toxinE2561_RS00485Not AvailablePositive109751 - 11003210498.7
parb/repb/spo0j family partition proteinE2561_RS00490Not AvailablePositive110420 - 11072511322.5
5-methylcytosine-specific restriction endonuclease system specificity protein mcrcE2561_RS00495Not AvailableNegative111016 - 11206839506.3
aaa family atpaseE2561_RS00500Not AvailableNegative112065 - 11430884101.0
parb/repb/spo0j family partition proteinE2561_RS00505Not AvailableNegative114567 - 11517022203.6
ecori family type ii restriction endonucleaseE2561_RS00510Not AvailablePositive115300 - 11615131733.9
parb/repb/spo0j family partition proteinE2561_RS00515Not AvailablePositive116154 - 11709236370.1
dde-type integrase/transposase/recombinaseE2561_RS00520Not AvailableNegative117293 - 11784720440.1

Displaying genes 131 – 140 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.