Shigella flexneri 5a str. M90T

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri 5a str. M90T is a Gram-negative, rod-shaped bacterium that is associated with host organisms. It is classified as a chemoorganotroph, indicating that it derives energy from the oxidation of organic compounds. This bacterium exhibits a facultative oxygen requirement, allowing it to thrive in both aerobic and anaerobic environments. The cell arrangement of S. flexneri 5a str. M90T typically occurs in pairs or singles, and it possesses flagella, which contributes to its mobility. The optimal growth temperature for this mesophilic organism is around 37°C, which aligns with the typical human body temperature, further underscoring its association with host organisms. S. flexneri 5a str. M90T has two replicons, which are likely indicative of its genetic complexity and adaptability. It features two membranes, characteristic of Gram-negative bacteria, and it does not undergo sporulation, indicating a reliance on its host environment for survival and replication. The biotic relationship of S. flexneri 5a str. M90T is classified as free-living, suggesting that it can exist independently but may also engage with host organisms. This interplay emphasizes its role as a pathogen, as it can cause shigellosis in humans. In conclusion, the traits of S. flexneri 5a str. M90T highlight its adaptation to a host-associated lifestyle, where its mobility, energy acquisition methods, and optimal growth conditions facilitate its survival and pathogenicity in human environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
Strain5a M90T

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri 5a str. M90T
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri 5a str. M90T chromosome, complete genome.

Gene Summary

Adenine Count

1126769 bp

Thymine Count

1129426 bp

Guanine Count

1172825 bp

Cytosine Count

1167694 bp

Genome Length

4596714 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

487 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter large permeaseEKN05_RS00630Not AvailableNegative131906 - 13320745804.5
trap transporter small permeaseEKN05_RS00635Not AvailableNegative133207 - 13371018306.2
23s rrna (guanine(1835)-n(2))-methyltransferase rlmgEKN05_RS00640Not AvailableNegative133755 - 13471834985.6
radical sam family heme chaperone hemwEKN05_RS00645Not AvailableNegative135032 - 13616842501.7
xtp/ditp diphosphataseEKN05_RS00650Not AvailableNegative136161 - 13675420951.8
duf167 family protein ygguEKN05_RS00655Not AvailableNegative136762 - 13705210429.8
osmotic shock tolerance protein yggtEKN05_RS00660Not AvailableNegative137049 - 13761521111.3
pyridoxal phosphate homeostasis proteinEKN05_RS00665Not AvailableNegative137633 - 13833725788.9
pilt/pilu family type 4a pilus atpaseEKN05_RS00670Not AvailablePositive138355 - 13933535944.3
holliday junction resolvase ruvxEKN05_RS00675Not AvailableNegative139511 - 13992715187.2

Displaying genes 571 – 580 of 4957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.