Shigella flexneri 5a str. M90T

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri 5a str. M90T is a Gram-negative, rod-shaped bacterium that is associated with host organisms. It is classified as a chemoorganotroph, indicating that it derives energy from the oxidation of organic compounds. This bacterium exhibits a facultative oxygen requirement, allowing it to thrive in both aerobic and anaerobic environments. The cell arrangement of S. flexneri 5a str. M90T typically occurs in pairs or singles, and it possesses flagella, which contributes to its mobility. The optimal growth temperature for this mesophilic organism is around 37°C, which aligns with the typical human body temperature, further underscoring its association with host organisms. S. flexneri 5a str. M90T has two replicons, which are likely indicative of its genetic complexity and adaptability. It features two membranes, characteristic of Gram-negative bacteria, and it does not undergo sporulation, indicating a reliance on its host environment for survival and replication. The biotic relationship of S. flexneri 5a str. M90T is classified as free-living, suggesting that it can exist independently but may also engage with host organisms. This interplay emphasizes its role as a pathogen, as it can cause shigellosis in humans. In conclusion, the traits of S. flexneri 5a str. M90T highlight its adaptation to a host-associated lifestyle, where its mobility, energy acquisition methods, and optimal growth conditions facilitate its survival and pathogenicity in human environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
Strain5a M90T

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri 5a str. M90T
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri 5a str. M90T chromosome, complete genome.

Gene Summary

Adenine Count

1126769 bp

Thymine Count

1129426 bp

Guanine Count

1172825 bp

Cytosine Count

1167694 bp

Genome Length

4596714 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

487 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i toxin-antitoxin system toxin ldr family proteinEKN05_RS21250Not AvailableNegative4172637 - 41727443882.93
type i toxin-antitoxin system toxic polypeptide ldrdEKN05_RS21260Not AvailableNegative4173120 - 41732273916.94
aromatic amino acid transport family proteinEKN05_RS21270Not AvailablePositive4173703 - 417497447306.4
dipeptide abc transporter atp-binding subunit dppfEKN05_RS21275Not AvailableNegative4175004 - 417600837548.6
dipeptide abc transporter atp-binding proteinEKN05_RS21280Not AvailableNegative4176005 - 417698835846.5
dipeptide abc transporter permease dppcEKN05_RS21285Not AvailableNegative4176999 - 417790132268.4
dipeptide abc transporter permease dppbEKN05_RS21290Not AvailableNegative4177911 - 417893037527.5
dipeptide abc transporter substrate-binding protein dppaEKN05_RS21300Not AvailableNegative4179238 - 418084560314.9
Trna-proNot AvailableNot AvailablePositive4181590 - 4181666Not Available
kdo(2)-lipid a phosphoethanolamine 7''-transferaseEKN05_RS21310Not AvailableNegative4181758 - 418344963822.0

Displaying genes 4241 – 4250 of 4957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.