Shigella flexneri 5a str. M90T

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri 5a str. M90T is a Gram-negative, non-sporulating rod-shaped bacterium that typically exists in pairs or singles and is classified as a facultative anaerobe. This strain thrives at an optimal temperature of 37.0°C, indicating its adaptation to the human body, where it is primarily host-associated. As a chemoorganotroph, S. flexneri 5a str. M90T derives energy from organic compounds, which aligns with its ecological niche within the gastrointestinal tract of its host. The facultative anaerobic nature of this microbe allows it to survive in both aerobic and anaerobic environments, enhancing its adaptability to varying conditions within the host. This metabolic versatility is particularly significant as it may facilitate the bacterium's persistence and growth in the nutrient-rich environment of the intestines, where it can compete with other microbial inhabitants. Given its specific traits and host-associated habitat, S. flexneri 5a str. M90T provides a valuable model for understanding the dynamics of microbial behavior in the human gut, especially in relation to its interactions with both host cells and other microbial species. This insight underscores the importance of studying such organisms to unravel their roles in health and disease, particularly in the context of intestinal microbiota composition and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
Strain5a M90T

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri 5a str. M90T
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri 5a str. M90T


Gene Summary

Adenine Count

1126769 bp

Thymine Count

1129426 bp

Guanine Count

1172825 bp

Cytosine Count

1167694 bp

Genome Length

4596714 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

487 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+399564 - 399584Not Available
Qued-like queosine biosynthesis proteinEKN05_RS02045Not Available+403430 - 40379213642.4
fad-dependent oxidoreductaseEKN05_RS02050Not Available+403870 - 40514146392.8
ferredoxin family proteinEKN05_RS02055Not Available+405132 - 4053929749.74
AttlNot AvailableNot Available+405526 - 405537Not Available
IntegraseEKN05_RS25520Not Available+405608 - 4056883617.28
TransposaseEKN05_RS02065Not Available-405698 - 4057843432.19
Leucine-rich repeat proteinEKN05_RS02070Not Available+405876 - 40763966521.8
Tail fiber proteinEKN05_RS02080Not Available-407819 - 40844223563.7
Putative tail fiber proteinEKN05_RS02085Not Available-408393 - 40980850286.1

Displaying genes 1 – 10 of 4957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites