Hydrogenophaga pseudoflava strain DSM 1084

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga pseudoflava strain DSM 1084 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is notable for possessing two replicons, which are indicated by its accession numbers NZ_CP037867.1 and NZ_CP037868.1. As an aerobic bacterium, Hydrogenophaga pseudoflava requires oxygen for its metabolic processes, positioning it within environments rich in this element. Its unique traits make it a subject of interest within the wider context of microbial ecology, particularly in environments where aerobic degradation of organic compounds occurs. The presence of two replicons in its genetic structure may suggest a complex regulatory mechanism for gene expression and adaptation to various environmental conditions, contributing to its ecological versatility. Understanding the genetic framework of Hydrogenophaga pseudoflava can provide insights into its metabolic capabilities and its role in biogeochemical cycles, especially those involving hydrogen and other small molecules in its natural habitats. Overall, Hydrogenophaga pseudoflava strain DSM 1084 exemplifies the diversity of aerobic, Gram-negative bacteria and their potential contributions to ecological processes and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga pseudoflava
Strainstrain DSM 1084

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084,

Gene Summary

Adenine Count

8372 bp

Thymine Count

9031 bp

Guanine Count

14491 bp

Cytosine Count

13294 bp

Genome Length

45188 bp

Protein-coding Genes

55 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease catalytic domain-containing proteinHPF_RS04110Not AvailableNegative825983 - 82802873375.7
yqia/ycfp family alpha/beta fold hydrolaseHPF_RS04115Not AvailableNegative828068 - 82869423308.0
rod shape-determining protein rodaHPF_RS04120Not AvailablePositive828718 - 82987241674.0
nad(p)-dependent oxidoreductaseHPF_RS04125Not AvailablePositive829872 - 83077430938.3
metalloprotease tlddHPF_RS04130Not AvailablePositive830835 - 83229551164.0
3-deoxy-7-phosphoheptulonate synthaseHPF_RS04135Not AvailablePositive832519 - 83364641169.2
hypothetical proteinHPF_RS04140Not AvailablePositive833766 - 83479738844.6
hypothetical proteinHPF_RS04145Not AvailablePositive834863 - 83518311802.9
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseHPF_RS04150Not AvailableNegative835177 - 83657149798.6
hypothetical proteinHPF_RS04155Not AvailablePositive836611 - 83724023075.3

Displaying genes 881 – 890 of 4741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.