Helicobacter pylori strain HP42K

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain HP42K is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and presence of flagella, which allows it to inhabit the gastric environment of various hosts, including Homo sapiens, Gallus gallus, Aves, Primates, Mammalia, Amoeba, Rodentia, and Cricetinae. This strain is associated with health issues such as chronic gastric inflammation, gastric ulcers, and various forms of gastric cancer, including adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. HP42K has a mesophilic temperature range, with an optimal growth temperature of 37°C, and exhibits a cell arrangement of singles. It possesses three replicons and two membranes, indicating a complex genetic organization typical of many pathogenic bacteria. While it is free-living in its host-associated environment, its pathogenicity in humans is well-documented, contributing to a range of gastrointestinal diseases, including peptic ulcer disease and dyspepsia. The wide array of health effects linked to H. pylori HP42K underscores its ecological significance in the human gastrointestinal tract, where it can cause both symptomatic and asymptomatic conditions. The bacterium’s ability to induce chronic inflammation and various forms of cancer highlights its role in host health and disease dynamics. Understanding the traits and pathogenic potential of HP42K can provide insights into the management and treatment of related gastric conditions.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain HP42K

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain HP42K
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain HP42K plasmid pHP42-2, complete

Gene Summary

Adenine Count

945 bp

Thymine Count

737 bp

Guanine Count

467 bp

Cytosine Count

509 bp

Genome Length

2658 bp

Protein-coding Genes

1 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rida family proteinD8X56_RS04880Not AvailableNegative1015025 - 101540213448.2
Trna-glyNot AvailableNot AvailablePositive1015719 - 1015793Not Available
Trna-leuNot AvailableNot AvailablePositive1015835 - 1015921Not Available
Trna-cysNot AvailableNot AvailablePositive1015995 - 1016069Not Available
Trna-serNot AvailableNot AvailablePositive1016117 - 1016204Not Available
na+/h+ antiporter nhac family proteinD8X56_RS04905Not AvailablePositive1016330 - 101782053905.6
hypothetical proteinD8X56_RS04910Not AvailablePositive1018098 - 101846013626.7
duf3944 domain-containing proteinD8X56_RS08250Not AvailableNegative1018428 - 10186307527.24
lapa family proteinD8X56_RS04915Not AvailableNegative1018837 - 101985039736.2
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhD8X56_RS04920Not AvailableNegative1019860 - 102031217333.0

Displaying genes 951 – 960 of 1588 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total