Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain WCHEC000837 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain WCHEC000837 plasmid pNDM4_000837, complete
Gene Summary
Adenine Count
11103 bp
Thymine Count
11055 bp
Guanine Count
11694 bp
Cytosine Count
11632 bp
Genome Length
45484 bp
Protein-coding Genes
32 genes
Non-Coding Genes
22 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssf | D9N32_RS21695 | Not Available | Negative | 3955634 - 3957484 | 71102.8 |
| type vi secretion system baseplate subunit tsse | D9N32_RS21700 | Not Available | Negative | 3957488 - 3957901 | 15455.0 |
| type vi secretion system contractile sheath large subunit | D9N32_RS21705 | Not Available | Negative | 3957908 - 3959383 | 55767.1 |
| hypothetical protein | D9N32_RS21710 | Not Available | Negative | 3959434 - 3959658 | 8476.09 |
| type vi secretion system contractile sheath small subunit | D9N32_RS21715 | Not Available | Negative | 3959693 - 3960193 | 18005.4 |
| hcp family type vi secretion system effector | D9N32_RS21720 | Not Available | Positive | 3960890 - 3961408 | 19256.8 |
| type vi secretion system tip protein vgrg | D9N32_RS21730 | Not Available | Positive | 3961618 - 3963759 | 79525.8 |
| rhs element core protein | D9N32_RS21735 | Not Available | Positive | 3963835 - 3968334 | 167053.0 |
| hypothetical protein | D9N32_RS21740 | Not Available | Positive | 3968334 - 3968711 | 14109.8 |
| tail fiber assembly protein | D9N32_RS21745 | Not Available | Positive | 3968932 - 3970064 | 41821.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





