Haloplanus rubicundus strain CBA1113

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Haloplanus

Description

Haloplanus rubicundus strain CBA1113 is characterized by having two replicons, which is a notable feature in microbial genetics, as it may contribute to its adaptability and genetic diversity. The strain is cataloged under the accessions NZ_CP031150.1 and NZ_CP031152.1, which provide a basis for further genomic studies and comparisons with related microorganisms. The presence of two replicons can indicate a complex genomic architecture, potentially allowing for distinct regulatory mechanisms and functional specialization of its genetic material. This trait is often associated with increased resilience in varying environmental conditions, which can be particularly advantageous for survival in diverse habitats. From a biological perspective, the dual-replicon structure may enable Haloplanus rubicundus strain CBA1113 to efficiently manage metabolic processes and respond to environmental stresses. This adaptability can have significant ecological implications, particularly in saline or extreme environments where such microorganisms are typically found. Understanding the genomic organization of Haloplanus rubicundus strain CBA1113 can provide insights into its ecological roles, such as nutrient cycling and interactions with other microbial communities in its habitat. Overall, the genomic traits of Haloplanus rubicundus strain CBA1113 highlight its potential importance in microbial ecology and its ability to thrive in extreme conditions.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHaloplanus
SpeciesHaloplanus rubicundus
Strainstrain CBA1113

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Haloplanus rubicundus strain CBA1113 plasmid pCBA1113-02, complete

Gene Summary

Adenine Count

19195 bp

Thymine Count

18557 bp

Guanine Count

27135 bp

Cytosine Count

26896 bp

Genome Length

91783 bp

Protein-coding Genes

93 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-pseudoNot AvailableNot AvailablePositive8951 - 9023Not Available
Trna-pseudoNot AvailableNot AvailablePositive9028 - 9114Not Available
hypothetical proteinDU500_RS18415Not AvailablePositive9117 - 92574988.78
Trna-gluNot AvailableNot AvailablePositive9306 - 9378Not Available
Trna-pseudoNot AvailableNot AvailablePositive9482 - 9552Not Available
hypothetical proteinDU500_RS17545Not AvailablePositive9565 - 996915810.1
Trna-gluNot AvailableNot AvailablePositive10017 - 10092Not Available
Trna-argNot AvailableNot AvailablePositive10518 - 10592Not Available
trove domain-containing proteinDU500_RS17560Not AvailablePositive10706 - 1223556803.0
Trna-pseudoNot AvailableNot AvailablePositive12263 - 12335Not Available

Displaying genes 11 – 20 of 3607 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.