Haloplanus rubicundus strain CBA1113

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Haloplanus

Description

Haloplanus rubicundus strain CBA1113 is characterized by having two replicons, which is a notable feature in microbial genetics, as it may contribute to its adaptability and genetic diversity. The strain is cataloged under the accessions NZ_CP031150.1 and NZ_CP031152.1, which provide a basis for further genomic studies and comparisons with related microorganisms. The presence of two replicons can indicate a complex genomic architecture, potentially allowing for distinct regulatory mechanisms and functional specialization of its genetic material. This trait is often associated with increased resilience in varying environmental conditions, which can be particularly advantageous for survival in diverse habitats. From a biological perspective, the dual-replicon structure may enable Haloplanus rubicundus strain CBA1113 to efficiently manage metabolic processes and respond to environmental stresses. This adaptability can have significant ecological implications, particularly in saline or extreme environments where such microorganisms are typically found. Understanding the genomic organization of Haloplanus rubicundus strain CBA1113 can provide insights into its ecological roles, such as nutrient cycling and interactions with other microbial communities in its habitat. Overall, the genomic traits of Haloplanus rubicundus strain CBA1113 highlight its potential importance in microbial ecology and its ability to thrive in extreme conditions.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHaloplanus
SpeciesHaloplanus rubicundus
Strainstrain CBA1113

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Haloplanus rubicundus strain CBA1113 plasmid pCBA1113-02, complete

Gene Summary

Adenine Count

19195 bp

Thymine Count

18557 bp

Guanine Count

27135 bp

Cytosine Count

26896 bp

Genome Length

91783 bp

Protein-coding Genes

93 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDU500_RS17475Not AvailablePositive1430 - 178312620.3
hypothetical proteinDU500_RS17480Not AvailablePositive1790 - 211912188.9
hypothetical proteinDU500_RS17485Not AvailablePositive2218 - 258313789.7
hypothetical proteinDU500_RS17490Not AvailablePositive2580 - 314920581.0
arsr family transcriptional regulatorDU500_RS17495Not AvailableNegative3410 - 389818278.4
hypothetical proteinDU500_RS17500Not AvailablePositive4014 - 481430860.6
helix-turn-helix transcriptional regulatorDU500_RS17505Not AvailablePositive4919 - 532615377.0
hypothetical proteinDU500_RS17515Not AvailablePositive5884 - 675933042.6
hypothetical proteinDU500_RS17520Not AvailableNegative7151 - 777123295.5
Trna-aspNot AvailableNot AvailablePositive8575 - 8648Not Available

Displaying genes 1 – 10 of 3607 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.