Dickeya fangzhongdai strain DSM 101947

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya fangzhongdai strain DSM 101947 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain, identified in the DSM (Deutsche Sammlung von Mikroorganismen und Zellkulturen), is notable for having two replicons, which may influence its genetic stability and adaptability. The strain is cataloged under two accession numbers: NZ_CP025003.1 and NZ_CP025004.1, indicating its genomic sequences are available for further study. These genomic resources are valuable for researchers aiming to explore the genetic basis of its traits and behaviors. Ecologically, Dickeya fangzhongdai is part of a genus known for its involvement in plant pathogenesis, particularly affecting crops. Understanding the genomic structure and motility of this strain can provide insights into its interactions with host plants and its role in agricultural environments. The presence of flagella suggests that this bacterium has the ability to navigate its environment effectively, which could be crucial for its survival and pathogenicity. Overall, the traits of Dickeya fangzhongdai DSM 101947 highlight its potential significance in microbiology and plant science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya fangzhongdai
Strainstrain DSM 101947

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Allium cepa, Pyrus pyrifolia, Colocasia esculenta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya fangzhongdai strain DSM 101947 plasmid pJS5, complete

Gene Summary

Adenine Count

1282 bp

Thymine Count

1519 bp

Guanine Count

1169 bp

Cytosine Count

1314 bp

Genome Length

5284 bp

Protein-coding Genes

7 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family oxidoreductaseCVE23_RS07285Not AvailablePositive1575665 - 157642626463.6
virk/ybjx family proteinCVE23_RS07290Not AvailableNegative1576476 - 157742636250.1
duf1471 domain-containing proteinCVE23_RS07295Not AvailableNegative1577872 - 15781329259.94
hemin-degrading factorCVE23_RS07300Not AvailablePositive1578815 - 157984638378.6
hemin abc transporter substrate-binding proteinCVE23_RS07305Not AvailablePositive1579843 - 158065828199.5
feccd family abc transporter permeaseCVE23_RS07310Not AvailablePositive1580688 - 158164433551.7
heme abc transporter atp-binding proteinCVE23_RS07315Not AvailablePositive1581637 - 158243128860.8
tonb-dependent receptor domain-containing proteinCVE23_RS07320Not AvailablePositive1582637 - 158510289590.3
lactonase family proteinCVE23_RS07325Not AvailablePositive1585281 - 158642340491.3
dps family proteinCVE23_RS07330Not AvailableNegative1586518 - 158700318098.8

Displaying genes 1561 – 1570 of 4453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0010449N(6)-(D-ribulosyl)-L-lysineC11H23N2O6Chemical structure of N(6)-(D-ribulosyl)-L-lysineNot available
Average279.312Da
Monoisotopic279.1550629Da
BASm0010451N(6)-(3-O-phospho-D-ribulosyl)-L-lysineC11H22N2O9PChemical structure of N(6)-(3-O-phospho-D-ribulosyl)-L-lysineNot available
Average357.276Da
Monoisotopic357.1068409Da
BASm0010454N(6)-(D-erythrulosyl)-L-lysineC10H21N2O5Chemical structure of N(6)-(D-erythrulosyl)-L-lysineNot available
Average249.286Da
Monoisotopic249.1444982Da
BASm0010455N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineC10H20N2O8PChemical structure of N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineNot available
Average327.25Da
Monoisotopic327.09627619Da

Displaying 1–10 of 10 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC9649655
Bleeding cankerCausesPMC9649655
Soft rot diseaseCausesPMC9649655
Bleeding canker diseaseCausesPMC9649655

Displaying health effects 1 – 4 of 4 in total