Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Dickeya
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Dickeya |
| Species | Dickeya fangzhongdai |
| Strain | strain DSM 101947 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Allium cepa, Pyrus pyrifolia, Colocasia esculenta |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Dickeya fangzhongdai strain DSM 101947 plasmid pJS5, complete
Gene Summary
Adenine Count
1282 bp
Thymine Count
1519 bp
Guanine Count
1169 bp
Cytosine Count
1314 bp
Genome Length
5284 bp
Protein-coding Genes
7 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative dna-binding response regulator | CVE23_RS21405 | Not Available | Positive | 4765878 - 4766576 | 26382.9 |
| chromosomal replication initiator protein dnaa | CVE23_RS00005 | Not Available | Positive | 82 - 1470 | 52089.4 |
| dna polymerase iii subunit beta | CVE23_RS00010 | Not Available | Positive | 1475 - 2575 | 40543.9 |
| dna replication/repair protein recf | CVE23_RS00015 | Not Available | Positive | 2726 - 3811 | 40564.5 |
| dna topoisomerase (atp-hydrolyzing) subunit b | CVE23_RS00020 | Not Available | Positive | 3829 - 6240 | 89965.9 |
| caspase domain-containing protein | CVE23_RS00025 | Not Available | Negative | 6528 - 7502 | 35245.8 |
| tir domain-containing protein | CVE23_RS00030 | Not Available | Negative | 7552 - 7866 | 12068.4 |
| toll/interleukin-1 receptor domain-containing protein | CVE23_RS00035 | Not Available | Negative | 7961 - 8464 | 19584.2 |
| tir domain-containing protein | CVE23_RS00040 | Not Available | Negative | 8467 - 8886 | 15530.6 |
| mfs transporter | CVE23_RS00045 | Not Available | Negative | 9231 - 10415 | 41194.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC9649655 |
| Bleeding canker | Causes | PMC9649655 |
| Soft rot disease | Causes | PMC9649655 |
| Bleeding canker disease | Causes | PMC9649655 |

