Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain is notable for its possession of flagella, which facilitates motility in its natural habitat. R. ruber is known for its metabolic versatility and capacity to degrade a variety of organic compounds, making it an important player in soil ecosystems. The strain YYL has a complex genomic structure, with three replicons identified, which may contribute to its adaptability and resilience in diverse soil conditions. The presence of multiple replicons can enhance genetic flexibility, allowing the bacterium to respond effectively to environmental changes and challenges. The accession numbers associated with Rhodococcus ruber strain YYL are NZ_CP024890.1, NZ_CP024891.1, and NZ_CP024892.1, which provide a means for researchers to access its genomic data for further study. Understanding the genetic makeup of this strain can shed light on its ecological roles, particularly in bioremediation and nutrient cycling in soil ecosystems. In summary, Rhodococcus ruber strain YYL exemplifies the complex interactions within soil microbiomes, where its motility, genetic adaptability, and enzymatic capabilities play crucial roles in maintaining soil health and function. Further investigation into its specific ecological contributions could enhance our understanding of soil microbiology and its implications for environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate--trna ligaseCSW53_RS01425Not AvailableNegative333189 - 33496765054.4
neutral zinc metallopeptidaseCSW53_RS01430Not AvailablePositive335113 - 33602731589.4
lipase maturation factor family proteinCSW53_RS01435Not AvailablePositive336116 - 33755554692.6
wax ester/triacylglycerol synthase family o-acyltransferaseCSW53_RS01440Not AvailableNegative337962 - 33936850890.1
response regulatorCSW53_RS01445Not AvailableNegative339412 - 34006223373.4
pyridoxamine 5'-phosphate oxidase family proteinCSW53_RS01450Not AvailableNegative340153 - 34057514822.6
gaf domain-containing proteinCSW53_RS01455Not AvailablePositive340787 - 34249361064.2
rna polymerase sigma factorCSW53_RS01460Not AvailableNegative342626 - 34379542237.2
ycii family proteinCSW53_RS01465Not AvailableNegative343803 - 34421014753.5
hypothetical proteinCSW53_RS01470Not AvailablePositive344421 - 34483114930.8

Displaying genes 741 – 750 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.