Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain is notable for its possession of flagella, which facilitates motility in its natural habitat. R. ruber is known for its metabolic versatility and capacity to degrade a variety of organic compounds, making it an important player in soil ecosystems. The strain YYL has a complex genomic structure, with three replicons identified, which may contribute to its adaptability and resilience in diverse soil conditions. The presence of multiple replicons can enhance genetic flexibility, allowing the bacterium to respond effectively to environmental changes and challenges. The accession numbers associated with Rhodococcus ruber strain YYL are NZ_CP024890.1, NZ_CP024891.1, and NZ_CP024892.1, which provide a means for researchers to access its genomic data for further study. Understanding the genetic makeup of this strain can shed light on its ecological roles, particularly in bioremediation and nutrient cycling in soil ecosystems. In summary, Rhodococcus ruber strain YYL exemplifies the complex interactions within soil microbiomes, where its motility, genetic adaptability, and enzymatic capabilities play crucial roles in maintaining soil health and function. Further investigation into its specific ecological contributions could enhance our understanding of soil microbiology and its implications for environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mu transposase c-terminal domain-containing proteinCSW53_RS23615Not AvailablePositive5085458 - 508684351993.2
aaa family atpaseCSW53_RS23620Not AvailablePositive5086843 - 508765231132.4
recombinase family proteinCSW53_RS23625Not AvailablePositive5087795 - 508888939141.0
atp-binding proteinCSW53_RS23630Not AvailablePositive5089098 - 508957116347.6
had-ic family p-type atpaseCSW53_RS23635Not AvailableNegative5089979 - 509090232257.4
m23 family metallopeptidaseCSW53_RS23640Not AvailablePositive5091494 - 509220123139.4
duf3105 domain-containing proteinCSW53_RS23645Not AvailablePositive5092464 - 509314123619.8
duf305 domain-containing proteinCSW53_RS23650Not AvailablePositive5093138 - 509387225560.7
duf4229 domain-containing proteinCSW53_RS23655Not AvailablePositive5093981 - 50942208535.92
nramp family divalent metal transporterCSW53_RS23660Not AvailableNegative5094242 - 509548043321.1

Displaying genes 5011 – 5020 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.