Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain is notable for its possession of flagella, which facilitates motility in its natural habitat. R. ruber is known for its metabolic versatility and capacity to degrade a variety of organic compounds, making it an important player in soil ecosystems. The strain YYL has a complex genomic structure, with three replicons identified, which may contribute to its adaptability and resilience in diverse soil conditions. The presence of multiple replicons can enhance genetic flexibility, allowing the bacterium to respond effectively to environmental changes and challenges. The accession numbers associated with Rhodococcus ruber strain YYL are NZ_CP024890.1, NZ_CP024891.1, and NZ_CP024892.1, which provide a means for researchers to access its genomic data for further study. Understanding the genetic makeup of this strain can shed light on its ecological roles, particularly in bioremediation and nutrient cycling in soil ecosystems. In summary, Rhodococcus ruber strain YYL exemplifies the complex interactions within soil microbiomes, where its motility, genetic adaptability, and enzymatic capabilities play crucial roles in maintaining soil health and function. Further investigation into its specific ecological contributions could enhance our understanding of soil microbiology and its implications for environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c biogenesis protein resbCSW53_RS23565Not AvailableNegative5076016 - 507764759187.8
cytochrome c biogenesis ccda family proteinCSW53_RS23570Not AvailableNegative5077644 - 507845027520.3
tlpa disulfide reductase family proteinCSW53_RS23575Not AvailableNegative5078447 - 507900419638.3
duf3703 domain-containing proteinCSW53_RS23580Not AvailableNegative5080418 - 50805916378.68
signal peptidase iiCSW53_RS23585Not AvailableNegative5080597 - 508110617427.1
heavy metal translocating p-type atpaseCSW53_RS23590Not AvailableNegative5081103 - 508306166899.5
arsr/smtb family transcription factorCSW53_RS23595Not AvailableNegative5083058 - 508344713257.8
cadmium resistance transporterCSW53_RS23600Not AvailableNegative5083704 - 508430020529.4
arsr/smtb family transcription factorCSW53_RS23605Not AvailableNegative5084297 - 508465612948.6
recombinase family proteinCSW53_RS23610Not AvailablePositive5084854 - 508545622003.3

Displaying genes 5001 – 5010 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.