Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain is notable for its possession of flagella, which facilitates motility in its natural habitat. R. ruber is known for its metabolic versatility and capacity to degrade a variety of organic compounds, making it an important player in soil ecosystems. The strain YYL has a complex genomic structure, with three replicons identified, which may contribute to its adaptability and resilience in diverse soil conditions. The presence of multiple replicons can enhance genetic flexibility, allowing the bacterium to respond effectively to environmental changes and challenges. The accession numbers associated with Rhodococcus ruber strain YYL are NZ_CP024890.1, NZ_CP024891.1, and NZ_CP024892.1, which provide a means for researchers to access its genomic data for further study. Understanding the genetic makeup of this strain can shed light on its ecological roles, particularly in bioremediation and nutrient cycling in soil ecosystems. In summary, Rhodococcus ruber strain YYL exemplifies the complex interactions within soil microbiomes, where its motility, genetic adaptability, and enzymatic capabilities play crucial roles in maintaining soil health and function. Further investigation into its specific ecological contributions could enhance our understanding of soil microbiology and its implications for environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
benzoate 1,2-dioxygenase small subunitCSW53_RS20760Not AvailablePositive4466490 - 446699319884.3
benzoate 1,2-dioxygenase electron transfer component bencCSW53_RS20765Not AvailablePositive4467027 - 446863458382.3
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseCSW53_RS20770Not AvailablePositive4468631 - 446944028405.7
mfs transporterCSW53_RS20775Not AvailablePositive4469550 - 447089645990.0
helix-turn-helix transcriptional regulatorCSW53_RS20780Not AvailablePositive4470908 - 447359296971.3
benzoate/h(+) symporter bene family transporterCSW53_RS20785Not AvailablePositive4473601 - 447485742938.3
hypothetical proteinCSW53_RS28090Not AvailableNegative4474891 - 44750615968.07
nad(p)h-dependent glycerol-3-phosphate dehydrogenaseCSW53_RS20790Not AvailablePositive4475258 - 447626535207.4
flavin-containing monooxygenaseCSW53_RS20795Not AvailablePositive4476356 - 447778352212.0
nitroreductaseCSW53_RS20800Not AvailablePositive4477821 - 447850124628.1

Displaying genes 4431 – 4440 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.