Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YYL |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.
Gene Summary
Adenine Count
38842 bp
Thymine Count
39959 bp
Guanine Count
78903 bp
Cytosine Count
78650 bp
Genome Length
236354 bp
Protein-coding Genes
211 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-tyr | Not Available | Not Available | Positive | 3353717 - 3353802 | Not Available |
| yajq family cyclic di-gmp-binding protein | CSW53_RS15400 | Not Available | Positive | 3353950 - 3354441 | 18018.3 |
| zinc metalloprotease htpx | CSW53_RS15405 | Not Available | Negative | 3354517 - 3355377 | 30786.8 |
| polyprenyl synthetase family protein | CSW53_RS15410 | Not Available | Negative | 3355482 - 3356528 | 36494.1 |
| geranylgeranyl reductase family protein | CSW53_RS15415 | Not Available | Positive | 3356666 - 3357937 | 44643.2 |
| demethylmenaquinone methyltransferase | CSW53_RS15420 | Not Available | Negative | 3357949 - 3358647 | 25266.3 |
| glycosyltransferase family 4 protein | CSW53_RS15425 | Not Available | Negative | 3358736 - 3359878 | 40095.2 |
| duf3592 domain-containing protein | CSW53_RS15430 | Not Available | Negative | 3359967 - 3360380 | 14427.6 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | CSW53_RS15435 | Not Available | Negative | 3360388 - 3362007 | 56359.6 |
| flavin reductase family protein | CSW53_RS15440 | Not Available | Positive | 3362112 - 3362699 | 21119.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


