Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain is notable for its possession of flagella, which facilitates motility in its natural habitat. R. ruber is known for its metabolic versatility and capacity to degrade a variety of organic compounds, making it an important player in soil ecosystems. The strain YYL has a complex genomic structure, with three replicons identified, which may contribute to its adaptability and resilience in diverse soil conditions. The presence of multiple replicons can enhance genetic flexibility, allowing the bacterium to respond effectively to environmental changes and challenges. The accession numbers associated with Rhodococcus ruber strain YYL are NZ_CP024890.1, NZ_CP024891.1, and NZ_CP024892.1, which provide a means for researchers to access its genomic data for further study. Understanding the genetic makeup of this strain can shed light on its ecological roles, particularly in bioremediation and nutrient cycling in soil ecosystems. In summary, Rhodococcus ruber strain YYL exemplifies the complex interactions within soil microbiomes, where its motility, genetic adaptability, and enzymatic capabilities play crucial roles in maintaining soil health and function. Further investigation into its specific ecological contributions could enhance our understanding of soil microbiology and its implications for environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-tyrNot AvailableNot AvailablePositive3353717 - 3353802Not Available
yajq family cyclic di-gmp-binding proteinCSW53_RS15400Not AvailablePositive3353950 - 335444118018.3
zinc metalloprotease htpxCSW53_RS15405Not AvailableNegative3354517 - 335537730786.8
polyprenyl synthetase family proteinCSW53_RS15410Not AvailableNegative3355482 - 335652836494.1
geranylgeranyl reductase family proteinCSW53_RS15415Not AvailablePositive3356666 - 335793744643.2
demethylmenaquinone methyltransferaseCSW53_RS15420Not AvailableNegative3357949 - 335864725266.3
glycosyltransferase family 4 proteinCSW53_RS15425Not AvailableNegative3358736 - 335987840095.2
duf3592 domain-containing proteinCSW53_RS15430Not AvailableNegative3359967 - 336038014427.6
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseCSW53_RS15435Not AvailableNegative3360388 - 336200756359.6
flavin reductase family proteinCSW53_RS15440Not AvailablePositive3362112 - 336269921119.2

Displaying genes 3441 – 3450 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.