Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome p450 | YT1_RS05545 | Not Available | Positive | 961481 - 962734 | 47148.2 |
| fad-binding protein | YT1_RS05550 | Not Available | Positive | 963125 - 964696 | 55387.1 |
| mfs transporter | YT1_RS05555 | Not Available | Positive | 964794 - 966230 | 49466.4 |
| ntp transferase domain-containing protein | YT1_RS05560 | Not Available | Negative | 966211 - 966810 | 20591.7 |
| nuclear transport factor 2 family protein | YT1_RS05565 | Not Available | Negative | 966820 - 967248 | 15308.9 |
| tigr03619 family f420-dependent llm class oxidoreductase | YT1_RS05570 | Not Available | Negative | 967245 - 968123 | 32475.6 |
| thiolase domain-containing protein | YT1_RS05575 | Not Available | Negative | 968136 - 969311 | 41431.3 |
| thiolase domain-containing protein | YT1_RS05580 | Not Available | Negative | 969311 - 970372 | 36883.6 |
| zn-ribbon domain-containing ob-fold protein | YT1_RS05585 | Not Available | Negative | 970389 - 971366 | 35769.3 |
| llm class f420-dependent oxidoreductase | YT1_RS05590 | Not Available | Positive | 971457 - 972494 | 37219.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


