Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS05495 | Not Available | Negative | 953016 - 953435 | 14855.7 |
| nmra family protein | YT1_RS05500 | Not Available | Positive | 953673 - 954305 | 22197.9 |
| nad(p)h-dependent flavin oxidoreductase | YT1_RS05505 | Not Available | Negative | 954266 - 955366 | 37821.8 |
| cholesterol ring-cleaving hydrolase subunit ipdb | YT1_RS05510 | Not Available | Negative | 955363 - 956139 | 27753.2 |
| cholesterol ring-cleaving hydrolase subunit ipda | YT1_RS05515 | Not Available | Negative | 956136 - 957017 | 31920.8 |
| (7as)-7a-methyl-1,5-dioxo-2,3,5,6,7, 7a-hexahydro-1h-indene-carboxyl-coa hydrolase | YT1_RS05520 | Not Available | Negative | 957037 - 957798 | 26564.5 |
| sdr family oxidoreductase | YT1_RS05525 | Not Available | Positive | 957948 - 958862 | 31317.1 |
| gnat family n-acetyltransferase | YT1_RS05530 | Not Available | Negative | 958921 - 959580 | 24643.9 |
| nitroreductase family deazaflavin-dependent oxidoreductase | YT1_RS05535 | Not Available | Negative | 959660 - 960133 | 17564.3 |
| steroid 3-ketoacyl-coa thiolase | YT1_RS05540 | Not Available | Negative | 960135 - 961298 | 40170.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


