Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | YT1_RS05345 | Not Available | Negative | 924335 - 925021 | 24594.0 |
| sensor histidine kinase | YT1_RS05350 | Not Available | Negative | 925018 - 926259 | 44007.9 |
| duf6223 family protein | YT1_RS05355 | Not Available | Positive | 926479 - 926874 | 12208.1 |
| protein adenylyltransferase selo | YT1_RS05360 | Not Available | Positive | 927151 - 928659 | 53509.3 |
| dihydrofolate reductase family protein | YT1_RS05365 | Not Available | Negative | 928798 - 929442 | 22852.0 |
| zinc-ribbon domain-containing protein | YT1_RS05370 | Not Available | Negative | 930128 - 930331 | 7850.51 |
| hypothetical protein | YT1_RS05375 | Not Available | Negative | 930360 - 930698 | 12307.5 |
| rieske 2fe-2s domain-containing protein | YT1_RS05380 | Not Available | Negative | 930701 - 931843 | 43247.9 |
| 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9, 17-dione monooxygenase oxygenase subunit | YT1_RS05385 | Not Available | Positive | 932034 - 933209 | 42747.3 |
| 4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase | YT1_RS05390 | Not Available | Positive | 933221 - 934105 | 32342.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


