Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | YT1_RS05295 | Not Available | Positive | 911535 - 912437 | 32739.7 |
| tetr/acrr family transcriptional regulator | YT1_RS05300 | Not Available | Negative | 912504 - 913139 | 22528.8 |
| cell division protein zape | YT1_RS05305 | Not Available | Positive | 913186 - 914154 | 34906.9 |
| non-ribosomal peptide synthetase | YT1_RS05310 | Not Available | Positive | 914164 - 916737 | 93697.3 |
| cholesterol oxidase substrate-binding domain-containing protein | YT1_RS05315 | Not Available | Negative | 916771 - 918516 | 62923.1 |
| maoc/paaz c-terminal domain-containing protein | YT1_RS05320 | Not Available | Negative | 918636 - 919496 | 30152.9 |
| 3-oxosteroid 1-dehydrogenase | YT1_RS05325 | Not Available | Negative | 919547 - 921259 | 61068.8 |
| 2-keto-4-pentenoate hydratase | YT1_RS05330 | Not Available | Positive | 921390 - 922175 | 28176.6 |
| acetaldehyde dehydrogenase (acetylating) | YT1_RS05335 | Not Available | Positive | 922205 - 923134 | 32467.8 |
| 4-hydroxy-2-oxovalerate aldolase | YT1_RS05340 | Not Available | Positive | 923140 - 924198 | 37844.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


