Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS05245 | Not Available | Positive | 904009 - 904911 | 30344.7 |
| phage holin family protein | YT1_RS05250 | Not Available | Positive | 904908 - 905327 | 14555.8 |
| duf3618 domain-containing protein | YT1_RS05255 | Not Available | Positive | 905324 - 905920 | 20365.5 |
| hypothetical protein | YT1_RS05260 | Not Available | Negative | 906088 - 906303 | 7229.82 |
| hypothetical protein | YT1_RS05265 | Not Available | Positive | 906497 - 906772 | 9332.31 |
| adp-ribosylglycohydrolase family protein | YT1_RS05270 | Not Available | Negative | 906976 - 907917 | 31887.5 |
| flavodoxin family protein | YT1_RS05275 | Not Available | Positive | 908054 - 908800 | 27123.9 |
| hypothetical protein | YT1_RS05280 | Not Available | Positive | 908797 - 909300 | 17171.1 |
| non-homologous end-joining dna ligase | YT1_RS05285 | Not Available | Negative | 909360 - 910337 | 35544.7 |
| dmt family transporter | YT1_RS05290 | Not Available | Negative | 910409 - 911461 | 36224.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


