Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome p450 | YT1_RS05095 | Not Available | Positive | 864253 - 865605 | 49799.1 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS05100 | Not Available | Positive | 865602 - 866447 | 29971.8 |
| flavin-containing monooxygenase | YT1_RS05105 | Not Available | Positive | 866444 - 867970 | 56661.5 |
| dha2 family efflux mfs transporter permease subunit | YT1_RS05110 | Not Available | Positive | 867999 - 869432 | 49289.1 |
| mfs transporter | YT1_RS05115 | Not Available | Positive | 869600 - 870865 | 43752.5 |
| hydantoinase b/oxoprolinase family protein | YT1_RS05120 | Not Available | Negative | 870853 - 874488 | 129657.0 |
| metal abc transporter permease | YT1_RS05125 | Not Available | Negative | 874535 - 875449 | 30101.8 |
| metal abc transporter atp-binding protein | YT1_RS05130 | Not Available | Negative | 875446 - 876258 | 29007.8 |
| metal abc transporter solute-binding protein, zn/mn family | YT1_RS05135 | Not Available | Negative | 876394 - 877467 | 36480.0 |
| laci family dna-binding transcriptional regulator | YT1_RS05140 | Not Available | Positive | 877641 - 878750 | 39046.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


