Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine--trna ligase | YT1_RS04995 | Not Available | Positive | 841977 - 843371 | 51131.3 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | YT1_RS05000 | Not Available | Positive | 843371 - 844333 | 33664.2 |
| hypothetical protein | YT1_RS05005 | Not Available | Positive | 844451 - 844921 | 17100.3 |
| biotin-dependent carboxyltransferase family protein | YT1_RS05010 | Not Available | Negative | 844934 - 845803 | 29897.5 |
| sgnh/gdsl hydrolase family protein | YT1_RS05015 | Not Available | Positive | 845989 - 846669 | 24909.4 |
| tetr/acrr family transcriptional regulator | YT1_RS05020 | Not Available | Positive | 846729 - 847391 | 23565.2 |
| mmpl family transporter | YT1_RS05025 | Not Available | Positive | 847853 - 850036 | 77366.0 |
| hypothetical protein | YT1_RS05030 | Not Available | Positive | 850024 - 850527 | 18627.5 |
| acyl-coa dehydrogenase family protein | YT1_RS05035 | Not Available | Positive | 850508 - 851638 | 39447.4 |
| sdr family oxidoreductase | YT1_RS05040 | Not Available | Positive | 851649 - 852689 | 37180.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


