Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbonic anhydrase | YT1_RS04945 | Not Available | Positive | 833269 - 833895 | 21959.4 |
| hypothetical protein | YT1_RS04950 | Not Available | Positive | 833954 - 834742 | 26416.3 |
| dna integrity scanning diadenylate cyclase disa | YT1_RS04955 | Not Available | Negative | 834778 - 835863 | 39334.0 |
| paai family thioesterase | YT1_RS04960 | Not Available | Positive | 835961 - 836521 | 19675.5 |
| dna polymerase iv | YT1_RS04965 | Not Available | Negative | 836576 - 837823 | 44231.5 |
| dna repair protein rada | YT1_RS04970 | Not Available | Negative | 837849 - 839261 | 48575.7 |
| hypothetical protein | YT1_RS04975 | Not Available | Negative | 839354 - 839992 | 21497.9 |
| rna polymerase-binding transcription factor card | YT1_RS04980 | Not Available | Positive | 840280 - 840768 | 17878.3 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | YT1_RS04985 | Not Available | Positive | 840796 - 841488 | 23509.3 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | YT1_RS04990 | Not Available | Positive | 841489 - 841965 | 16018.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


