Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS04895 | Not Available | Positive | 823348 - 824295 | 34785.8 |
| pig-l deacetylase family protein | YT1_RS04900 | Not Available | Negative | 824305 - 825093 | 28542.4 |
| acyl-coa dehydrogenase family protein | YT1_RS04905 | Not Available | Positive | 825200 - 826396 | 43113.2 |
| atp-binding protein | YT1_RS04910 | Not Available | Negative | 826416 - 829262 | 102121.0 |
| helix-turn-helix transcriptional regulator | YT1_RS04915 | Not Available | Negative | 829310 - 829926 | 22118.6 |
| osmc family protein | YT1_RS04920 | Not Available | Positive | 830170 - 830610 | 14756.1 |
| duf1990 family protein | YT1_RS04925 | Not Available | Negative | 830674 - 831177 | 18592.2 |
| antibiotic biosynthesis monooxygenase family protein | YT1_RS04930 | Not Available | Negative | 831188 - 831514 | 11746.7 |
| alpha/beta fold hydrolase | YT1_RS04935 | Not Available | Positive | 831547 - 832290 | 27748.5 |
| a/g-specific adenine glycosylase | YT1_RS04940 | Not Available | Negative | 832298 - 833173 | 31974.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


