Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rossmann-like and duf2520 domain-containing protein | YT1_RS04845 | Not Available | Positive | 812280 - 813215 | 32163.6 |
| pantoate--beta-alanine ligase | YT1_RS04850 | Not Available | Positive | 813208 - 814149 | 33054.9 |
| aspartate 1-decarboxylase | YT1_RS04855 | Not Available | Positive | 814181 - 814618 | 15579.6 |
| type iii pantothenate kinase | YT1_RS04860 | Not Available | Positive | 814621 - 815463 | 30242.7 |
| rhodanese-like domain-containing protein | YT1_RS04865 | Not Available | Positive | 815551 - 815994 | 14849.8 |
| lysine--trna ligase | YT1_RS04870 | Not Available | Positive | 816071 - 817579 | 56213.0 |
| histone-like nucleoid-structuring protein lsr2 | YT1_RS04875 | Not Available | Positive | 817682 - 818032 | 12784.0 |
| phospholipase d-like domain-containing protein | YT1_RS04880 | Not Available | Positive | 818377 - 819807 | 53530.1 |
| atp-dependent clp protease atp-binding subunit | YT1_RS04885 | Not Available | Positive | 820064 - 822589 | 93242.8 |
| tigr03086 family metal-binding protein | YT1_RS04890 | Not Available | Negative | 822660 - 823253 | 21402.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


