Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna lysidine(34) synthetase tils | YT1_RS04795 | Not Available | Positive | 801929 - 802927 | 35008.8 |
| hypoxanthine phosphoribosyltransferase | YT1_RS04800 | Not Available | Positive | 802948 - 803502 | 20365.4 |
| protein kinase domain-containing protein | YT1_RS04805 | Not Available | Negative | 803490 - 805682 | 79463.2 |
| atp-dependent zinc metalloprotease ftsh | YT1_RS04810 | Not Available | Positive | 805910 - 808249 | 84793.6 |
| gtp cyclohydrolase i fole | YT1_RS04815 | Not Available | Positive | 808282 - 808935 | 23673.3 |
| dihydropteroate synthase | YT1_RS04820 | Not Available | Positive | 808938 - 809789 | 29098.7 |
| dihydroneopterin aldolase | YT1_RS04825 | Not Available | Positive | 809786 - 810154 | 13144.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | YT1_RS04830 | Not Available | Positive | 810151 - 810675 | 19451.9 |
| duf3180 domain-containing protein | YT1_RS04835 | Not Available | Positive | 810675 - 811139 | 15942.7 |
| duf6779 domain-containing protein | YT1_RS04840 | Not Available | Positive | 811264 - 812151 | 31550.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


