Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m1 family metallopeptidaseYT1_RS04745Not AvailableNegative788544 - 78990550881.2
pls/posa family non-ribosomal peptide synthetaseYT1_RS04750Not AvailableNegative789902 - 793816137560.0
aminotransferase class v-fold plp-dependent enzymeYT1_RS04755Not AvailablePositive794245 - 79556445461.8
ybak/ebsc family proteinYT1_RS04760Not AvailableNegative795620 - 79609316405.8
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylaseYT1_RS04765Not AvailableNegative796158 - 79667919209.7
crotonase/enoyl-coa hydratase family proteinYT1_RS04770Not AvailablePositive796827 - 79765729266.1
srpbcc family proteinYT1_RS04775Not AvailablePositive797669 - 79877241103.5
inorganic diphosphataseYT1_RS04780Not AvailableNegative798827 - 79931818214.3
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseYT1_RS04785Not AvailablePositive799489 - 80089547101.3
zinc-dependent metalloproteaseYT1_RS04790Not AvailablePositive800886 - 80192637591.3

Displaying genes 771 – 780 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.