Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family metallopeptidase | YT1_RS04745 | Not Available | Negative | 788544 - 789905 | 50881.2 |
| pls/posa family non-ribosomal peptide synthetase | YT1_RS04750 | Not Available | Negative | 789902 - 793816 | 137560.0 |
| aminotransferase class v-fold plp-dependent enzyme | YT1_RS04755 | Not Available | Positive | 794245 - 795564 | 45461.8 |
| ybak/ebsc family protein | YT1_RS04760 | Not Available | Negative | 795620 - 796093 | 16405.8 |
| 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | YT1_RS04765 | Not Available | Negative | 796158 - 796679 | 19209.7 |
| crotonase/enoyl-coa hydratase family protein | YT1_RS04770 | Not Available | Positive | 796827 - 797657 | 29266.1 |
| srpbcc family protein | YT1_RS04775 | Not Available | Positive | 797669 - 798772 | 41103.5 |
| inorganic diphosphatase | YT1_RS04780 | Not Available | Negative | 798827 - 799318 | 18214.3 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | YT1_RS04785 | Not Available | Positive | 799489 - 800895 | 47101.3 |
| zinc-dependent metalloprotease | YT1_RS04790 | Not Available | Positive | 800886 - 801926 | 37591.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


