Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 776404 - 777926 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 778227 - 781359 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 781465 - 781581 | Not Available |
| helix-turn-helix transcriptional regulator | YT1_RS04710 | Not Available | Negative | 781669 - 782427 | 27935.3 |
| is21 family transposase | YT1_RS04715 | Not Available | Positive | 782594 - 784153 | 57510.3 |
| atp-binding protein | YT1_RS04720 | Not Available | Positive | 784150 - 784893 | 28147.9 |
| is1634 family transposase | YT1_RS04725 | Not Available | Negative | 785010 - 785825 | 29692.5 |
| hypothetical protein | YT1_RS04730 | Not Available | Negative | 786057 - 786485 | 15277.2 |
| gntr family transcriptional regulator | YT1_RS04735 | Not Available | Positive | 786633 - 787274 | 23176.6 |
| mfs transporter | YT1_RS04740 | Not Available | Positive | 787358 - 788539 | 40293.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


