Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rv3654c family tade-like protein | YT1_RS04645 | Not Available | Positive | 765830 - 766174 | 11457.8 |
| dead/deah box helicase | YT1_RS04650 | Not Available | Negative | 766182 - 768527 | 82808.3 |
| cold-shock protein | YT1_RS04655 | Not Available | Positive | 768920 - 769123 | 7279.44 |
| hypothetical protein | YT1_RS04660 | Not Available | Positive | 769253 - 769840 | 20522.7 |
| type i dna topoisomerase | YT1_RS04665 | Not Available | Positive | 769975 - 772905 | 106637.0 |
| helix-turn-helix domain-containing protein | YT1_RS04670 | Not Available | Positive | 772937 - 773611 | 23632.2 |
| voc family protein | YT1_RS04675 | Not Available | Negative | 773616 - 774002 | 13826.2 |
| dna polymerase iii subunit delta' | YT1_RS04680 | Not Available | Positive | 774097 - 775284 | 42076.1 |
| Trna-thr | Not Available | Not Available | Positive | 775350 - 775422 | Not Available |
| hypothetical protein | YT1_RS04690 | Not Available | Positive | 775711 - 775908 | 7114.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


