Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | YT1_RS04595 | Not Available | Positive | 755668 - 757041 | 49138.9 |
| acetate--coa ligase | YT1_RS04600 | Not Available | Negative | 757112 - 759049 | 70367.8 |
| hypothetical protein | YT1_RS04605 | Not Available | Positive | 759253 - 760005 | 25690.6 |
| had-ib family hydrolase | YT1_RS04610 | Not Available | Negative | 760433 - 761275 | 30417.4 |
| septum site-determining protein ssd | YT1_RS04615 | Not Available | Positive | 761620 - 762693 | 36011.2 |
| tada family conjugal transfer-associated atpase | YT1_RS04620 | Not Available | Positive | 762690 - 763862 | 41232.7 |
| type ii secretion system f family protein | YT1_RS04625 | Not Available | Positive | 763859 - 764659 | 26836.9 |
| type ii secretion system f family protein | YT1_RS04630 | Not Available | Positive | 764623 - 765255 | 21024.2 |
| duf4244 domain-containing protein | YT1_RS04635 | Not Available | Positive | 765298 - 765501 | 6726.15 |
| tade family type iv pilus minor pilin | YT1_RS04640 | Not Available | Positive | 765519 - 765833 | 10507.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


