Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | YT1_RS04545 | Not Available | Positive | 747385 - 748173 | 27909.9 |
| crp/fnr family transcriptional regulator | YT1_RS04550 | Not Available | Negative | 748240 - 748914 | 24760.8 |
| hypothetical protein | YT1_RS04555 | Not Available | Negative | 749113 - 749382 | 10310.5 |
| endonuclease iii | YT1_RS04560 | Not Available | Positive | 749455 - 750249 | 29437.3 |
| tlpa family protein disulfide reductase | YT1_RS04565 | Not Available | Positive | 750254 - 750910 | 22599.0 |
| nudix hydrolase | YT1_RS04570 | Not Available | Positive | 750907 - 751605 | 25207.0 |
| marp family serine protease | YT1_RS04575 | Not Available | Positive | 751602 - 752792 | 40099.6 |
| alpha/beta fold hydrolase | YT1_RS04580 | Not Available | Negative | 752805 - 753737 | 34613.3 |
| phage holin family protein | YT1_RS04585 | Not Available | Negative | 753758 - 754258 | 18420.6 |
| na+/h+ antiporter nhaa | YT1_RS04590 | Not Available | Negative | 754255 - 755472 | 42437.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


