Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fur family transcriptional regulator | YT1_RS04445 | Not Available | Positive | 727751 - 728182 | 15103.9 |
| catalase | YT1_RS04450 | Not Available | Positive | 728259 - 729719 | 54354.4 |
| dps family protein | YT1_RS04455 | Not Available | Positive | 730015 - 730488 | 16880.9 |
| metal-dependent hydrolase | YT1_RS04460 | Not Available | Positive | 730632 - 731441 | 27898.1 |
| cholesterol oxidase substrate-binding domain-containing protein | YT1_RS04465 | Not Available | Positive | 731529 - 733304 | 63980.6 |
| family 43 glycosylhydrolase | YT1_RS04470 | Not Available | Positive | 733431 - 734876 | 50842.9 |
| maleylpyruvate isomerase family mycothiol-dependent enzyme | YT1_RS04475 | Not Available | Positive | 734926 - 735672 | 26777.6 |
| abc transporter substrate-binding protein | YT1_RS04480 | Not Available | Negative | 735685 - 736704 | 35716.4 |
| fatty acid desaturase family protein | YT1_RS04485 | Not Available | Negative | 736785 - 738005 | 46033.0 |
| tetr/acrr family transcriptional regulator c-terminal domain-containing protein | YT1_RS04490 | Not Available | Positive | 738359 - 739114 | 27182.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


