Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phzf family phenazine biosynthesis protein | YT1_RS04395 | Not Available | Negative | 716232 - 717077 | 29673.2 |
| mfs transporter | YT1_RS04400 | Not Available | Negative | 717293 - 718633 | 46517.6 |
| acyl-coa synthetase | YT1_RS04405 | Not Available | Negative | 718659 - 720182 | 54370.9 |
| acyl-coa dehydrogenase family protein | YT1_RS04410 | Not Available | Negative | 720232 - 721398 | 42381.5 |
| tetr/acrr family transcriptional regulator | YT1_RS04415 | Not Available | Positive | 721588 - 722166 | 21094.6 |
| flavin-containing monooxygenase | YT1_RS04420 | Not Available | Positive | 722163 - 723668 | 55374.9 |
| fad-dependent oxidoreductase | YT1_RS04425 | Not Available | Positive | 723665 - 725380 | 61176.1 |
| acetoacetate decarboxylase family protein | YT1_RS04430 | Not Available | Positive | 725373 - 725999 | 22336.6 |
| duf5602 domain-containing protein | YT1_RS04435 | Not Available | Negative | 726015 - 726812 | 28371.1 |
| duf5602 domain-containing protein | YT1_RS04440 | Not Available | Negative | 726815 - 727615 | 29126.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


