Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maoc family dehydratase | YT1_RS04295 | Not Available | Negative | 697901 - 698380 | 17324.0 |
| 4-hydroxyphenyl-beta-ketoacyl-coa hydrolase | YT1_RS04300 | Not Available | Negative | 698395 - 699285 | 32921.3 |
| 4-hydroxyphenyl-beta-hydroxyacyl-coa dehydrogenase | YT1_RS04305 | Not Available | Negative | 699282 - 700193 | 31764.8 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS04310 | Not Available | Positive | 700309 - 700758 | 16467.9 |
| amp-binding protein | YT1_RS04315 | Not Available | Negative | 701064 - 702665 | 58359.6 |
| hnh endonuclease | YT1_RS27805 | Not Available | Positive | 703009 - 703374 | 13383.2 |
| tetr/acrr family transcriptional regulator | YT1_RS04325 | Not Available | Negative | 703417 - 704040 | 23473.4 |
| oxygenase mpab family protein | YT1_RS04330 | Not Available | Positive | 704097 - 705338 | 46488.8 |
| gnat family n-acetyltransferase | YT1_RS04335 | Not Available | Positive | 705502 - 706014 | 18367.1 |
| hypothetical protein | YT1_RS04340 | Not Available | Positive | 706095 - 706502 | 14524.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


