Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarylacetoacetate hydrolase family protein | YT1_RS04245 | Not Available | Negative | 688607 - 689497 | 32124.0 |
| voc family protein | YT1_RS04250 | Not Available | Negative | 689553 - 690125 | 21227.0 |
| pucr family transcriptional regulator | YT1_RS04255 | Not Available | Positive | 690432 - 691706 | 45751.5 |
| flavin reductase family protein | YT1_RS04260 | Not Available | Positive | 691959 - 692411 | 16103.4 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | YT1_RS04265 | Not Available | Positive | 692491 - 693132 | 22374.5 |
| acyl-coa dehydrogenase family protein | YT1_RS04270 | Not Available | Positive | 693253 - 694416 | 42044.0 |
| nuclear transport factor 2 family protein | YT1_RS04275 | Not Available | Positive | 694494 - 694883 | 14171.7 |
| fad-dependent monooxygenase | YT1_RS04280 | Not Available | Positive | 695026 - 696789 | 63780.0 |
| spw repeat protein | YT1_RS04285 | Not Available | Negative | 696758 - 697150 | 13502.4 |
| tetr/acrr family transcriptional regulator | YT1_RS04290 | Not Available | Positive | 697252 - 697827 | 20765.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


