Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygenase mpab family protein | YT1_RS04055 | Not Available | Negative | 644657 - 645631 | 37632.3 |
| aldehyde dehydrogenase family protein | YT1_RS04060 | Not Available | Negative | 645637 - 647151 | 53891.2 |
| acyl-coa dehydrogenase family protein | YT1_RS04065 | Not Available | Positive | 647281 - 648432 | 41635.8 |
| gntr family transcriptional regulator | YT1_RS04070 | Not Available | Positive | 648436 - 649104 | 24703.3 |
| transposase | YT1_RS04075 | Not Available | Negative | 649218 - 650903 | 58992.7 |
| duf4334 domain-containing protein | YT1_RS04080 | Not Available | Negative | 651054 - 651530 | 17931.1 |
| tetr/acrr family transcriptional regulator | YT1_RS04085 | Not Available | Negative | 651626 - 652903 | 45848.9 |
| nad(p)h-dependent flavin oxidoreductase | YT1_RS04090 | Not Available | Positive | 653153 - 654136 | 34614.5 |
| enoyl-coa hydratase | YT1_RS04095 | Not Available | Positive | 654133 - 654912 | 26623.1 |
| fatty-acid--coa ligase fadd5 | YT1_RS04100 | Not Available | Positive | 655187 - 656770 | 56615.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


