Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing protein | YT1_RS04005 | Not Available | Positive | 634024 - 636174 | 76174.6 |
| type iv toxin-antitoxin system abiei family antitoxin domain-containing protein | YT1_RS04010 | Not Available | Positive | 636296 - 637330 | 38133.6 |
| class i sam-dependent methyltransferase | YT1_RS04015 | Not Available | Negative | 637369 - 638670 | 47978.1 |
| fad-binding oxidoreductase | YT1_RS04020 | Not Available | Negative | 638667 - 640100 | 53681.9 |
| srpbcc family protein | YT1_RS04025 | Not Available | Positive | 640237 - 640671 | 15586.5 |
| rv3717 family n-acetylmuramoyl-l-alanine amidase | YT1_RS04030 | Not Available | Negative | 640668 - 641426 | 25767.2 |
| ybab/ebfc family nucleoid-associated protein | YT1_RS04035 | Not Available | Positive | 641503 - 641826 | 10767.0 |
| recombination mediator recr | YT1_RS04040 | Not Available | Positive | 641836 - 642444 | 22309.8 |
| tetr/acrr family transcriptional regulator | YT1_RS04045 | Not Available | Positive | 642441 - 642998 | 20469.0 |
| mfs transporter | YT1_RS04050 | Not Available | Positive | 643099 - 644598 | 51390.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


