Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS03960 | Not Available | Positive | 625444 - 625857 | 14419.0 |
| cutinase family protein | YT1_RS03965 | Not Available | Positive | 625976 - 626662 | 24443.9 |
| m50 family metallopeptidase | YT1_RS03970 | Not Available | Positive | 626662 - 627876 | 42163.6 |
| hypothetical protein | YT1_RS03975 | Not Available | Positive | 627947 - 628579 | 22099.1 |
| helix-turn-helix domain-containing protein | YT1_RS03980 | Not Available | Positive | 628579 - 628806 | 8123.93 |
| hypothetical protein | YT1_RS27100 | Not Available | Positive | 628917 - 629054 | 4623.66 |
| hypothetical protein | YT1_RS03985 | Not Available | Positive | 629319 - 630005 | 23129.2 |
| histidine kinase | YT1_RS03990 | Not Available | Positive | 630050 - 631984 | 67276.8 |
| response regulator transcription factor | YT1_RS03995 | Not Available | Positive | 631969 - 632631 | 22727.6 |
| acetyl-coa c-acetyltransferase | YT1_RS04000 | Not Available | Positive | 632781 - 633995 | 42340.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


