Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | YT1_RS03910 | Not Available | Negative | 611711 - 612505 | 27478.1 |
| dna polymerase iii subunit gamma and tau | YT1_RS03915 | Not Available | Positive | 612580 - 614802 | 77835.5 |
| amidase | YT1_RS03920 | Not Available | Positive | 614959 - 616374 | 50401.3 |
| response regulator transcription factor | YT1_RS03925 | Not Available | Positive | 616467 - 617180 | 25605.5 |
| iclr family transcriptional regulator | YT1_RS03930 | Not Available | Negative | 617219 - 617974 | 27197.1 |
| apc family permease | YT1_RS03935 | Not Available | Negative | 617971 - 619392 | 48457.5 |
| aldehyde dehydrogenase family protein | YT1_RS03940 | Not Available | Positive | 619839 - 621344 | 52926.6 |
| helix-turn-helix transcriptional regulator | YT1_RS03945 | Not Available | Positive | 621549 - 623029 | 51288.3 |
| primary-amine oxidase | YT1_RS03950 | Not Available | Positive | 623026 - 624972 | 72014.5 |
| hypothetical protein | YT1_RS03955 | Not Available | Positive | 624978 - 625430 | 15215.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


