Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS03860 | Not Available | Negative | 605642 - 605809 | 6279.18 |
| duf6098 family protein | YT1_RS03865 | Not Available | Positive | 606074 - 606526 | 17127.4 |
| zip family metal transporter | YT1_RS03870 | Not Available | Positive | 606715 - 607410 | 23185.6 |
| hhh-gpd-type base excision dna repair protein | YT1_RS03875 | Not Available | Positive | 607461 - 608036 | 20304.3 |
| hypothetical protein | YT1_RS03880 | Not Available | Negative | 608077 - 608256 | 6398.42 |
| glsb/yeaq/ymge family stress response membrane protein | YT1_RS03885 | Not Available | Negative | 608475 - 608753 | 9621.48 |
| duf4193 family protein | YT1_RS03890 | Not Available | Negative | 608905 - 609180 | 10118.5 |
| beta-mannosidase | YT1_RS03895 | Not Available | Negative | 609365 - 610510 | 40601.3 |
| hypothetical protein | YT1_RS03900 | Not Available | Positive | 610793 - 611122 | 11607.2 |
| helix-turn-helix transcriptional regulator | YT1_RS27875 | Not Available | Positive | 611273 - 611608 | 11720.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


