Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | YT1_RS03810 | Not Available | Negative | 596081 - 597601 | 55465.8 |
| tigr03086 family metal-binding protein | YT1_RS03815 | Not Available | Negative | 597643 - 598200 | 20079.4 |
| rna-guided endonuclease insq/tnpb family protein | YT1_RS03820 | Not Available | Positive | 598318 - 599475 | 43058.9 |
| helix-turn-helix domain-containing protein | YT1_RS03825 | Not Available | Negative | 599510 - 600322 | 28722.2 |
| yoak family protein | YT1_RS03830 | Not Available | Negative | 600383 - 601033 | 22081.5 |
| duf1524 domain-containing protein | YT1_RS03835 | Not Available | Positive | 601168 - 602187 | 35366.1 |
| Trna-ser | Not Available | Not Available | Positive | 602328 - 602415 | Not Available |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 602533 - 602627 | Not Available |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | YT1_RS03850 | Not Available | Positive | 602677 - 603966 | 46459.6 |
| alpha/beta fold hydrolase | YT1_RS03855 | Not Available | Negative | 604091 - 605554 | 52445.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


