Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | Positive | 553462 - 553578 | Not Available |
| hypothetical protein | YT1_RS03615 | Not Available | Positive | 553796 - 554404 | 22996.6 |
| giy-yig nuclease family protein | YT1_RS03620 | Not Available | Negative | 554461 - 555597 | 40908.5 |
| putative glycolipid-binding domain-containing protein | YT1_RS03625 | Not Available | Positive | 555815 - 556426 | 21686.6 |
| amidase | YT1_RS03630 | Not Available | Negative | 556437 - 557783 | 46094.9 |
| prephenate dehydrogenase | YT1_RS03635 | Not Available | Negative | 557771 - 558733 | 32825.8 |
| trna adenosine deaminase-associated protein | YT1_RS03640 | Not Available | Positive | 558782 - 559321 | 19382.8 |
| nucleoside deaminase | YT1_RS03645 | Not Available | Positive | 559322 - 559795 | 16556.8 |
| Trna-ser | Not Available | Not Available | Positive | 559841 - 559931 | Not Available |
| sterol desaturase family protein | YT1_RS03655 | Not Available | Negative | 560001 - 560951 | 36126.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


