Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | YT1_RS03510 | Not Available | Negative | 532410 - 533285 | 32769.5 |
| bacterial proteasome activator family protein | YT1_RS03515 | Not Available | Negative | 533324 - 533911 | 21046.0 |
| cysteine desulfurase-like protein | YT1_RS03520 | Not Available | Positive | 534068 - 535276 | 42541.8 |
| nad(p)h-quinone oxidoreductase | YT1_RS03525 | Not Available | Negative | 535292 - 536278 | 33928.0 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS03530 | Not Available | Positive | 536375 - 536863 | 18229.7 |
| Trna-ser | Not Available | Not Available | Positive | 536874 - 536958 | Not Available |
| duf1254 domain-containing protein | YT1_RS03540 | Not Available | Positive | 537157 - 538464 | 45753.1 |
| alpha/beta hydrolase | YT1_RS03545 | Not Available | Positive | 538593 - 539564 | 34415.7 |
| bifunctional metallophosphatase/5'-nucleotidase | YT1_RS03550 | Not Available | Negative | 539575 - 541257 | 58547.4 |
| histidinol-phosphate transaminase | YT1_RS03555 | Not Available | Negative | 541362 - 542447 | 38106.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


