Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6049 family protein | YT1_RS26875 | Not Available | Positive | 5649703 - 5652036 | 80659.0 |
| murein biosynthesis integral membrane protein murj | YT1_RS26880 | Not Available | Positive | 5652033 - 5655857 | 132293.0 |
| rna polymerase sigma factor sigm | YT1_RS26885 | Not Available | Positive | 5655940 - 5656485 | 20312.1 |
| hypothetical protein | YT1_RS26890 | Not Available | Positive | 5656537 - 5657235 | 23633.9 |
| tetr/acrr family transcriptional regulator | YT1_RS26895 | Not Available | Negative | 5657248 - 5657817 | 20197.1 |
| nadh:flavin oxidoreductase | YT1_RS26900 | Not Available | Positive | 5657899 - 5659098 | 43557.7 |
| thioredoxin-disulfide reductase | YT1_RS26905 | Not Available | Positive | 5659693 - 5660661 | 34528.0 |
| thioredoxin | YT1_RS26910 | Not Available | Positive | 5660693 - 5661022 | 11687.3 |
| n-acetylmuramoyl-l-alanine amidase | YT1_RS26915 | Not Available | Positive | 5661151 - 5662335 | 42914.7 |
| hypothetical protein | YT1_RS26920 | Not Available | Negative | 5662345 - 5663034 | 24911.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


