Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdpi family protein | YT1_RS26775 | Not Available | Positive | 5625993 - 5626397 | 12857.8 |
| response regulator transcription factor | YT1_RS26780 | Not Available | Positive | 5626597 - 5627730 | 40557.3 |
| hemerythrin domain-containing protein | YT1_RS26785 | Not Available | Negative | 5627754 - 5628407 | 25017.6 |
| duf1648 domain-containing protein | YT1_RS26790 | Not Available | Positive | 5628524 - 5629477 | 33037.9 |
| glutamate decarboxylase | YT1_RS26795 | Not Available | Positive | 5629590 - 5630978 | 51051.0 |
| yqge/algh family protein | YT1_RS26800 | Not Available | Negative | 5631031 - 5631639 | 21676.1 |
| tetr/acrr family transcriptional regulator | YT1_RS26805 | Not Available | Negative | 5631694 - 5632389 | 24514.3 |
| nad-dependent epimerase/dehydratase family protein | YT1_RS26810 | Not Available | Positive | 5632519 - 5633445 | 33026.2 |
| class ii glutamine amidotransferase | YT1_RS26815 | Not Available | Negative | 5633449 - 5634318 | 31613.1 |
| mfs transporter | YT1_RS26820 | Not Available | Positive | 5634454 - 5635731 | 42755.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


