Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deor/glpr family dna-binding transcription regulator | YT1_RS26675 | Not Available | Negative | 5603770 - 5604579 | 28919.6 |
| carbohydrate abc transporter permease | YT1_RS26680 | Not Available | Positive | 5604893 - 5605852 | 34882.1 |
| carbohydrate abc transporter permease | YT1_RS26685 | Not Available | Positive | 5605852 - 5606688 | 30525.2 |
| abc transporter substrate-binding protein | YT1_RS26690 | Not Available | Positive | 5606733 - 5608109 | 49854.4 |
| glycerophosphodiester phosphodiesterase | YT1_RS26695 | Not Available | Positive | 5608109 - 5608870 | 26747.7 |
| alcohol dehydrogenase catalytic domain-containing protein | YT1_RS26700 | Not Available | Positive | 5608960 - 5610069 | 38497.1 |
| cytochrome c oxidase subunit i | YT1_RS26705 | Not Available | Positive | 5610671 - 5612401 | 64098.6 |
| hypothetical protein | YT1_RS26710 | Not Available | Positive | 5612403 - 5612630 | 8117.08 |
| spermidine synthase | YT1_RS26715 | Not Available | Positive | 5612703 - 5613575 | 31604.8 |
| php domain-containing protein | YT1_RS26720 | Not Available | Negative | 5613581 - 5614609 | 37384.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


