Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deor/glpr family dna-binding transcription regulatorYT1_RS26675Not AvailableNegative5603770 - 560457928919.6
carbohydrate abc transporter permeaseYT1_RS26680Not AvailablePositive5604893 - 560585234882.1
carbohydrate abc transporter permeaseYT1_RS26685Not AvailablePositive5605852 - 560668830525.2
abc transporter substrate-binding proteinYT1_RS26690Not AvailablePositive5606733 - 560810949854.4
glycerophosphodiester phosphodiesteraseYT1_RS26695Not AvailablePositive5608109 - 560887026747.7
alcohol dehydrogenase catalytic domain-containing proteinYT1_RS26700Not AvailablePositive5608960 - 561006938497.1
cytochrome c oxidase subunit iYT1_RS26705Not AvailablePositive5610671 - 561240164098.6
hypothetical proteinYT1_RS26710Not AvailablePositive5612403 - 56126308117.08
spermidine synthaseYT1_RS26715Not AvailablePositive5612703 - 561357531604.8
php domain-containing proteinYT1_RS26720Not AvailableNegative5613581 - 561460937384.0

Displaying genes 5171 – 5180 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.