Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| llm class f420-dependent oxidoreductase | YT1_RS26475 | Not Available | Positive | 5548935 - 5549729 | 28879.2 |
| acetyl-coa acetyltransferase | YT1_RS26480 | Not Available | Positive | 5549860 - 5551086 | 43389.1 |
| carotenoid oxygenase family protein | YT1_RS26485 | Not Available | Positive | 5551097 - 5552614 | 56566.0 |
| winged helix-turn-helix transcriptional regulator | YT1_RS26490 | Not Available | Positive | 5552625 - 5553566 | 34857.8 |
| abc transporter substrate-binding protein/permease | YT1_RS26495 | Not Available | Positive | 5553603 - 5555399 | 63624.2 |
| amino acid abc transporter atp-binding protein | YT1_RS26500 | Not Available | Positive | 5555403 - 5556146 | 26570.2 |
| phox family protein | YT1_RS26505 | Not Available | Positive | 5556285 - 5558360 | 72955.7 |
| haloacid dehalogenase type ii | YT1_RS26510 | Not Available | Negative | 5558413 - 5559132 | 26211.4 |
| pucr family transcriptional regulator | YT1_RS26515 | Not Available | Negative | 5559226 - 5560521 | 47302.5 |
| phytoene desaturase family protein | YT1_RS26520 | Not Available | Negative | 5560514 - 5561941 | 49537.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


